PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_46112g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 438aa    MW: 48185.1 Da    PI: 7.502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_46112g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11237279754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  MA_46112g0010 237 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 279
                    79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-16233301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9236279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-16237293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-11237283No hitNo description
SuperFamilySSF550218.24E-5365436No hitNo description
CDDcd048732.75E-8366429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010444Biological Processguard mother cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MRNVTAVYGC QKTAKQKGWM KEGGGEAIEM GGWVREKASR ARQDGQWRVG KGVLLKKRKL  60
LIILFQSALE REQMESFKAM LEDEWYMPGG QDSNSLMDEL AYSSSFVSAP ETSSVFSLDP  120
SRLQSFMSFV PKKKTLPNTT MSSLLVAESP NTRALRKSPK GDSIRVQSSN LEEEGEEPLG  180
GEDNMDDESG GGGSGLLYET DDAKPEQVMS GQDGPAPGPG PPADKGKKKG LPAKNLMAER  240
RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAIEYLKELL QRINDLHTEL EGTSERPLSA  300
TALPLPLNLP VPSPFHYPLT PSTPPLIPCR IKEECPPISL PAHSEASDSQ PPRVEVKTRD  360
GRSLNIHMFC ARRPGLLLST MRALDELGLD VQQAVISCFN GFALDVFRAE QSRGGGDIAL  420
EEIKAVLLHT ANSHQITM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226244KKKGLPAKNLMAERRRRKK
2238245ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016578388.12e-91PREDICTED: transcription factor ICE1-like
SwissprotQ9LPW32e-83SCRM2_ARATH; Transcription factor SCREAM2
TrEMBLK4C8614e-91K4C861_SOLLC; Inducer of CBF expression 1
TrEMBLM0T5562e-92M0T556_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P08070_0017e-92(Musa acuminata)
STRINGSolyc06g068870.2.11e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.16e-80bHLH family protein